1015 lines
30 KiB
Python
1015 lines
30 KiB
Python
import functools
|
|
import sys
|
|
import math
|
|
import warnings
|
|
|
|
import numpy.core.numeric as _nx
|
|
from numpy.core.numeric import (
|
|
asarray, ScalarType, array, alltrue, cumprod, arange, ndim
|
|
)
|
|
from numpy.core.numerictypes import find_common_type, issubdtype
|
|
|
|
import numpy.matrixlib as matrixlib
|
|
from .function_base import diff
|
|
from numpy.core.multiarray import ravel_multi_index, unravel_index
|
|
from numpy.core.overrides import set_module
|
|
from numpy.core import overrides, linspace
|
|
from numpy.lib.stride_tricks import as_strided
|
|
|
|
|
|
array_function_dispatch = functools.partial(
|
|
overrides.array_function_dispatch, module='numpy')
|
|
|
|
|
|
__all__ = [
|
|
'ravel_multi_index', 'unravel_index', 'mgrid', 'ogrid', 'r_', 'c_',
|
|
's_', 'index_exp', 'ix_', 'ndenumerate', 'ndindex', 'fill_diagonal',
|
|
'diag_indices', 'diag_indices_from'
|
|
]
|
|
|
|
|
|
def _ix__dispatcher(*args):
|
|
return args
|
|
|
|
|
|
@array_function_dispatch(_ix__dispatcher)
|
|
def ix_(*args):
|
|
"""
|
|
Construct an open mesh from multiple sequences.
|
|
|
|
This function takes N 1-D sequences and returns N outputs with N
|
|
dimensions each, such that the shape is 1 in all but one dimension
|
|
and the dimension with the non-unit shape value cycles through all
|
|
N dimensions.
|
|
|
|
Using `ix_` one can quickly construct index arrays that will index
|
|
the cross product. ``a[np.ix_([1,3],[2,5])]`` returns the array
|
|
``[[a[1,2] a[1,5]], [a[3,2] a[3,5]]]``.
|
|
|
|
Parameters
|
|
----------
|
|
args : 1-D sequences
|
|
Each sequence should be of integer or boolean type.
|
|
Boolean sequences will be interpreted as boolean masks for the
|
|
corresponding dimension (equivalent to passing in
|
|
``np.nonzero(boolean_sequence)``).
|
|
|
|
Returns
|
|
-------
|
|
out : tuple of ndarrays
|
|
N arrays with N dimensions each, with N the number of input
|
|
sequences. Together these arrays form an open mesh.
|
|
|
|
See Also
|
|
--------
|
|
ogrid, mgrid, meshgrid
|
|
|
|
Examples
|
|
--------
|
|
>>> a = np.arange(10).reshape(2, 5)
|
|
>>> a
|
|
array([[0, 1, 2, 3, 4],
|
|
[5, 6, 7, 8, 9]])
|
|
>>> ixgrid = np.ix_([0, 1], [2, 4])
|
|
>>> ixgrid
|
|
(array([[0],
|
|
[1]]), array([[2, 4]]))
|
|
>>> ixgrid[0].shape, ixgrid[1].shape
|
|
((2, 1), (1, 2))
|
|
>>> a[ixgrid]
|
|
array([[2, 4],
|
|
[7, 9]])
|
|
|
|
>>> ixgrid = np.ix_([True, True], [2, 4])
|
|
>>> a[ixgrid]
|
|
array([[2, 4],
|
|
[7, 9]])
|
|
>>> ixgrid = np.ix_([True, True], [False, False, True, False, True])
|
|
>>> a[ixgrid]
|
|
array([[2, 4],
|
|
[7, 9]])
|
|
|
|
"""
|
|
out = []
|
|
nd = len(args)
|
|
for k, new in enumerate(args):
|
|
if not isinstance(new, _nx.ndarray):
|
|
new = asarray(new)
|
|
if new.size == 0:
|
|
# Explicitly type empty arrays to avoid float default
|
|
new = new.astype(_nx.intp)
|
|
if new.ndim != 1:
|
|
raise ValueError("Cross index must be 1 dimensional")
|
|
if issubdtype(new.dtype, _nx.bool_):
|
|
new, = new.nonzero()
|
|
new = new.reshape((1,)*k + (new.size,) + (1,)*(nd-k-1))
|
|
out.append(new)
|
|
return tuple(out)
|
|
|
|
|
|
class nd_grid:
|
|
"""
|
|
Construct a multi-dimensional "meshgrid".
|
|
|
|
``grid = nd_grid()`` creates an instance which will return a mesh-grid
|
|
when indexed. The dimension and number of the output arrays are equal
|
|
to the number of indexing dimensions. If the step length is not a
|
|
complex number, then the stop is not inclusive.
|
|
|
|
However, if the step length is a **complex number** (e.g. 5j), then the
|
|
integer part of its magnitude is interpreted as specifying the
|
|
number of points to create between the start and stop values, where
|
|
the stop value **is inclusive**.
|
|
|
|
If instantiated with an argument of ``sparse=True``, the mesh-grid is
|
|
open (or not fleshed out) so that only one-dimension of each returned
|
|
argument is greater than 1.
|
|
|
|
Parameters
|
|
----------
|
|
sparse : bool, optional
|
|
Whether the grid is sparse or not. Default is False.
|
|
|
|
Notes
|
|
-----
|
|
Two instances of `nd_grid` are made available in the NumPy namespace,
|
|
`mgrid` and `ogrid`, approximately defined as::
|
|
|
|
mgrid = nd_grid(sparse=False)
|
|
ogrid = nd_grid(sparse=True)
|
|
|
|
Users should use these pre-defined instances instead of using `nd_grid`
|
|
directly.
|
|
"""
|
|
|
|
def __init__(self, sparse=False):
|
|
self.sparse = sparse
|
|
|
|
def __getitem__(self, key):
|
|
try:
|
|
size = []
|
|
typ = int
|
|
for kk in key:
|
|
step = kk.step
|
|
start = kk.start
|
|
if start is None:
|
|
start = 0
|
|
if step is None:
|
|
step = 1
|
|
if isinstance(step, (_nx.complexfloating, complex)):
|
|
size.append(int(abs(step)))
|
|
typ = float
|
|
else:
|
|
size.append(
|
|
int(math.ceil((kk.stop - start) / (step * 1.0))))
|
|
if (isinstance(step, (_nx.floating, float)) or
|
|
isinstance(start, (_nx.floating, float)) or
|
|
isinstance(kk.stop, (_nx.floating, float))):
|
|
typ = float
|
|
if self.sparse:
|
|
nn = [_nx.arange(_x, dtype=_t)
|
|
for _x, _t in zip(size, (typ,)*len(size))]
|
|
else:
|
|
nn = _nx.indices(size, typ)
|
|
for k, kk in enumerate(key):
|
|
step = kk.step
|
|
start = kk.start
|
|
if start is None:
|
|
start = 0
|
|
if step is None:
|
|
step = 1
|
|
if isinstance(step, (_nx.complexfloating, complex)):
|
|
step = int(abs(step))
|
|
if step != 1:
|
|
step = (kk.stop - start) / float(step - 1)
|
|
nn[k] = (nn[k]*step+start)
|
|
if self.sparse:
|
|
slobj = [_nx.newaxis]*len(size)
|
|
for k in range(len(size)):
|
|
slobj[k] = slice(None, None)
|
|
nn[k] = nn[k][tuple(slobj)]
|
|
slobj[k] = _nx.newaxis
|
|
return nn
|
|
except (IndexError, TypeError):
|
|
step = key.step
|
|
stop = key.stop
|
|
start = key.start
|
|
if start is None:
|
|
start = 0
|
|
if isinstance(step, (_nx.complexfloating, complex)):
|
|
step = abs(step)
|
|
length = int(step)
|
|
if step != 1:
|
|
step = (key.stop-start)/float(step-1)
|
|
return _nx.arange(0, length, 1, float)*step + start
|
|
else:
|
|
return _nx.arange(start, stop, step)
|
|
|
|
|
|
class MGridClass(nd_grid):
|
|
"""
|
|
`nd_grid` instance which returns a dense multi-dimensional "meshgrid".
|
|
|
|
An instance of `numpy.lib.index_tricks.nd_grid` which returns an dense
|
|
(or fleshed out) mesh-grid when indexed, so that each returned argument
|
|
has the same shape. The dimensions and number of the output arrays are
|
|
equal to the number of indexing dimensions. If the step length is not a
|
|
complex number, then the stop is not inclusive.
|
|
|
|
However, if the step length is a **complex number** (e.g. 5j), then
|
|
the integer part of its magnitude is interpreted as specifying the
|
|
number of points to create between the start and stop values, where
|
|
the stop value **is inclusive**.
|
|
|
|
Returns
|
|
-------
|
|
mesh-grid `ndarrays` all of the same dimensions
|
|
|
|
See Also
|
|
--------
|
|
lib.index_tricks.nd_grid : class of `ogrid` and `mgrid` objects
|
|
ogrid : like mgrid but returns open (not fleshed out) mesh grids
|
|
r_ : array concatenator
|
|
|
|
Examples
|
|
--------
|
|
>>> np.mgrid[0:5, 0:5]
|
|
array([[[0, 0, 0, 0, 0],
|
|
[1, 1, 1, 1, 1],
|
|
[2, 2, 2, 2, 2],
|
|
[3, 3, 3, 3, 3],
|
|
[4, 4, 4, 4, 4]],
|
|
[[0, 1, 2, 3, 4],
|
|
[0, 1, 2, 3, 4],
|
|
[0, 1, 2, 3, 4],
|
|
[0, 1, 2, 3, 4],
|
|
[0, 1, 2, 3, 4]]])
|
|
>>> np.mgrid[-1:1:5j]
|
|
array([-1. , -0.5, 0. , 0.5, 1. ])
|
|
|
|
"""
|
|
|
|
def __init__(self):
|
|
super().__init__(sparse=False)
|
|
|
|
|
|
mgrid = MGridClass()
|
|
|
|
|
|
class OGridClass(nd_grid):
|
|
"""
|
|
`nd_grid` instance which returns an open multi-dimensional "meshgrid".
|
|
|
|
An instance of `numpy.lib.index_tricks.nd_grid` which returns an open
|
|
(i.e. not fleshed out) mesh-grid when indexed, so that only one dimension
|
|
of each returned array is greater than 1. The dimension and number of the
|
|
output arrays are equal to the number of indexing dimensions. If the step
|
|
length is not a complex number, then the stop is not inclusive.
|
|
|
|
However, if the step length is a **complex number** (e.g. 5j), then
|
|
the integer part of its magnitude is interpreted as specifying the
|
|
number of points to create between the start and stop values, where
|
|
the stop value **is inclusive**.
|
|
|
|
Returns
|
|
-------
|
|
mesh-grid
|
|
`ndarrays` with only one dimension not equal to 1
|
|
|
|
See Also
|
|
--------
|
|
np.lib.index_tricks.nd_grid : class of `ogrid` and `mgrid` objects
|
|
mgrid : like `ogrid` but returns dense (or fleshed out) mesh grids
|
|
r_ : array concatenator
|
|
|
|
Examples
|
|
--------
|
|
>>> from numpy import ogrid
|
|
>>> ogrid[-1:1:5j]
|
|
array([-1. , -0.5, 0. , 0.5, 1. ])
|
|
>>> ogrid[0:5,0:5]
|
|
[array([[0],
|
|
[1],
|
|
[2],
|
|
[3],
|
|
[4]]), array([[0, 1, 2, 3, 4]])]
|
|
|
|
"""
|
|
|
|
def __init__(self):
|
|
super().__init__(sparse=True)
|
|
|
|
|
|
ogrid = OGridClass()
|
|
|
|
|
|
class AxisConcatenator:
|
|
"""
|
|
Translates slice objects to concatenation along an axis.
|
|
|
|
For detailed documentation on usage, see `r_`.
|
|
"""
|
|
# allow ma.mr_ to override this
|
|
concatenate = staticmethod(_nx.concatenate)
|
|
makemat = staticmethod(matrixlib.matrix)
|
|
|
|
def __init__(self, axis=0, matrix=False, ndmin=1, trans1d=-1):
|
|
self.axis = axis
|
|
self.matrix = matrix
|
|
self.trans1d = trans1d
|
|
self.ndmin = ndmin
|
|
|
|
def __getitem__(self, key):
|
|
# handle matrix builder syntax
|
|
if isinstance(key, str):
|
|
frame = sys._getframe().f_back
|
|
mymat = matrixlib.bmat(key, frame.f_globals, frame.f_locals)
|
|
return mymat
|
|
|
|
if not isinstance(key, tuple):
|
|
key = (key,)
|
|
|
|
# copy attributes, since they can be overridden in the first argument
|
|
trans1d = self.trans1d
|
|
ndmin = self.ndmin
|
|
matrix = self.matrix
|
|
axis = self.axis
|
|
|
|
objs = []
|
|
scalars = []
|
|
arraytypes = []
|
|
scalartypes = []
|
|
|
|
for k, item in enumerate(key):
|
|
scalar = False
|
|
if isinstance(item, slice):
|
|
step = item.step
|
|
start = item.start
|
|
stop = item.stop
|
|
if start is None:
|
|
start = 0
|
|
if step is None:
|
|
step = 1
|
|
if isinstance(step, (_nx.complexfloating, complex)):
|
|
size = int(abs(step))
|
|
newobj = linspace(start, stop, num=size)
|
|
else:
|
|
newobj = _nx.arange(start, stop, step)
|
|
if ndmin > 1:
|
|
newobj = array(newobj, copy=False, ndmin=ndmin)
|
|
if trans1d != -1:
|
|
newobj = newobj.swapaxes(-1, trans1d)
|
|
elif isinstance(item, str):
|
|
if k != 0:
|
|
raise ValueError("special directives must be the "
|
|
"first entry.")
|
|
if item in ('r', 'c'):
|
|
matrix = True
|
|
col = (item == 'c')
|
|
continue
|
|
if ',' in item:
|
|
vec = item.split(',')
|
|
try:
|
|
axis, ndmin = [int(x) for x in vec[:2]]
|
|
if len(vec) == 3:
|
|
trans1d = int(vec[2])
|
|
continue
|
|
except Exception as e:
|
|
raise ValueError(
|
|
"unknown special directive {!r}".format(item)
|
|
) from e
|
|
try:
|
|
axis = int(item)
|
|
continue
|
|
except (ValueError, TypeError) as e:
|
|
raise ValueError("unknown special directive") from e
|
|
elif type(item) in ScalarType:
|
|
newobj = array(item, ndmin=ndmin)
|
|
scalars.append(len(objs))
|
|
scalar = True
|
|
scalartypes.append(newobj.dtype)
|
|
else:
|
|
item_ndim = ndim(item)
|
|
newobj = array(item, copy=False, subok=True, ndmin=ndmin)
|
|
if trans1d != -1 and item_ndim < ndmin:
|
|
k2 = ndmin - item_ndim
|
|
k1 = trans1d
|
|
if k1 < 0:
|
|
k1 += k2 + 1
|
|
defaxes = list(range(ndmin))
|
|
axes = defaxes[:k1] + defaxes[k2:] + defaxes[k1:k2]
|
|
newobj = newobj.transpose(axes)
|
|
objs.append(newobj)
|
|
if not scalar and isinstance(newobj, _nx.ndarray):
|
|
arraytypes.append(newobj.dtype)
|
|
|
|
# Ensure that scalars won't up-cast unless warranted
|
|
final_dtype = find_common_type(arraytypes, scalartypes)
|
|
if final_dtype is not None:
|
|
for k in scalars:
|
|
objs[k] = objs[k].astype(final_dtype)
|
|
|
|
res = self.concatenate(tuple(objs), axis=axis)
|
|
|
|
if matrix:
|
|
oldndim = res.ndim
|
|
res = self.makemat(res)
|
|
if oldndim == 1 and col:
|
|
res = res.T
|
|
return res
|
|
|
|
def __len__(self):
|
|
return 0
|
|
|
|
# separate classes are used here instead of just making r_ = concatentor(0),
|
|
# etc. because otherwise we couldn't get the doc string to come out right
|
|
# in help(r_)
|
|
|
|
|
|
class RClass(AxisConcatenator):
|
|
"""
|
|
Translates slice objects to concatenation along the first axis.
|
|
|
|
This is a simple way to build up arrays quickly. There are two use cases.
|
|
|
|
1. If the index expression contains comma separated arrays, then stack
|
|
them along their first axis.
|
|
2. If the index expression contains slice notation or scalars then create
|
|
a 1-D array with a range indicated by the slice notation.
|
|
|
|
If slice notation is used, the syntax ``start:stop:step`` is equivalent
|
|
to ``np.arange(start, stop, step)`` inside of the brackets. However, if
|
|
``step`` is an imaginary number (i.e. 100j) then its integer portion is
|
|
interpreted as a number-of-points desired and the start and stop are
|
|
inclusive. In other words ``start:stop:stepj`` is interpreted as
|
|
``np.linspace(start, stop, step, endpoint=1)`` inside of the brackets.
|
|
After expansion of slice notation, all comma separated sequences are
|
|
concatenated together.
|
|
|
|
Optional character strings placed as the first element of the index
|
|
expression can be used to change the output. The strings 'r' or 'c' result
|
|
in matrix output. If the result is 1-D and 'r' is specified a 1 x N (row)
|
|
matrix is produced. If the result is 1-D and 'c' is specified, then a N x 1
|
|
(column) matrix is produced. If the result is 2-D then both provide the
|
|
same matrix result.
|
|
|
|
A string integer specifies which axis to stack multiple comma separated
|
|
arrays along. A string of two comma-separated integers allows indication
|
|
of the minimum number of dimensions to force each entry into as the
|
|
second integer (the axis to concatenate along is still the first integer).
|
|
|
|
A string with three comma-separated integers allows specification of the
|
|
axis to concatenate along, the minimum number of dimensions to force the
|
|
entries to, and which axis should contain the start of the arrays which
|
|
are less than the specified number of dimensions. In other words the third
|
|
integer allows you to specify where the 1's should be placed in the shape
|
|
of the arrays that have their shapes upgraded. By default, they are placed
|
|
in the front of the shape tuple. The third argument allows you to specify
|
|
where the start of the array should be instead. Thus, a third argument of
|
|
'0' would place the 1's at the end of the array shape. Negative integers
|
|
specify where in the new shape tuple the last dimension of upgraded arrays
|
|
should be placed, so the default is '-1'.
|
|
|
|
Parameters
|
|
----------
|
|
Not a function, so takes no parameters
|
|
|
|
|
|
Returns
|
|
-------
|
|
A concatenated ndarray or matrix.
|
|
|
|
See Also
|
|
--------
|
|
concatenate : Join a sequence of arrays along an existing axis.
|
|
c_ : Translates slice objects to concatenation along the second axis.
|
|
|
|
Examples
|
|
--------
|
|
>>> np.r_[np.array([1,2,3]), 0, 0, np.array([4,5,6])]
|
|
array([1, 2, 3, ..., 4, 5, 6])
|
|
>>> np.r_[-1:1:6j, [0]*3, 5, 6]
|
|
array([-1. , -0.6, -0.2, 0.2, 0.6, 1. , 0. , 0. , 0. , 5. , 6. ])
|
|
|
|
String integers specify the axis to concatenate along or the minimum
|
|
number of dimensions to force entries into.
|
|
|
|
>>> a = np.array([[0, 1, 2], [3, 4, 5]])
|
|
>>> np.r_['-1', a, a] # concatenate along last axis
|
|
array([[0, 1, 2, 0, 1, 2],
|
|
[3, 4, 5, 3, 4, 5]])
|
|
>>> np.r_['0,2', [1,2,3], [4,5,6]] # concatenate along first axis, dim>=2
|
|
array([[1, 2, 3],
|
|
[4, 5, 6]])
|
|
|
|
>>> np.r_['0,2,0', [1,2,3], [4,5,6]]
|
|
array([[1],
|
|
[2],
|
|
[3],
|
|
[4],
|
|
[5],
|
|
[6]])
|
|
>>> np.r_['1,2,0', [1,2,3], [4,5,6]]
|
|
array([[1, 4],
|
|
[2, 5],
|
|
[3, 6]])
|
|
|
|
Using 'r' or 'c' as a first string argument creates a matrix.
|
|
|
|
>>> np.r_['r',[1,2,3], [4,5,6]]
|
|
matrix([[1, 2, 3, 4, 5, 6]])
|
|
|
|
"""
|
|
|
|
def __init__(self):
|
|
AxisConcatenator.__init__(self, 0)
|
|
|
|
|
|
r_ = RClass()
|
|
|
|
|
|
class CClass(AxisConcatenator):
|
|
"""
|
|
Translates slice objects to concatenation along the second axis.
|
|
|
|
This is short-hand for ``np.r_['-1,2,0', index expression]``, which is
|
|
useful because of its common occurrence. In particular, arrays will be
|
|
stacked along their last axis after being upgraded to at least 2-D with
|
|
1's post-pended to the shape (column vectors made out of 1-D arrays).
|
|
|
|
See Also
|
|
--------
|
|
column_stack : Stack 1-D arrays as columns into a 2-D array.
|
|
r_ : For more detailed documentation.
|
|
|
|
Examples
|
|
--------
|
|
>>> np.c_[np.array([1,2,3]), np.array([4,5,6])]
|
|
array([[1, 4],
|
|
[2, 5],
|
|
[3, 6]])
|
|
>>> np.c_[np.array([[1,2,3]]), 0, 0, np.array([[4,5,6]])]
|
|
array([[1, 2, 3, ..., 4, 5, 6]])
|
|
|
|
"""
|
|
|
|
def __init__(self):
|
|
AxisConcatenator.__init__(self, -1, ndmin=2, trans1d=0)
|
|
|
|
|
|
c_ = CClass()
|
|
|
|
|
|
@set_module('numpy')
|
|
class ndenumerate:
|
|
"""
|
|
Multidimensional index iterator.
|
|
|
|
Return an iterator yielding pairs of array coordinates and values.
|
|
|
|
Parameters
|
|
----------
|
|
arr : ndarray
|
|
Input array.
|
|
|
|
See Also
|
|
--------
|
|
ndindex, flatiter
|
|
|
|
Examples
|
|
--------
|
|
>>> a = np.array([[1, 2], [3, 4]])
|
|
>>> for index, x in np.ndenumerate(a):
|
|
... print(index, x)
|
|
(0, 0) 1
|
|
(0, 1) 2
|
|
(1, 0) 3
|
|
(1, 1) 4
|
|
|
|
"""
|
|
|
|
def __init__(self, arr):
|
|
self.iter = asarray(arr).flat
|
|
|
|
def __next__(self):
|
|
"""
|
|
Standard iterator method, returns the index tuple and array value.
|
|
|
|
Returns
|
|
-------
|
|
coords : tuple of ints
|
|
The indices of the current iteration.
|
|
val : scalar
|
|
The array element of the current iteration.
|
|
|
|
"""
|
|
return self.iter.coords, next(self.iter)
|
|
|
|
def __iter__(self):
|
|
return self
|
|
|
|
|
|
@set_module('numpy')
|
|
class ndindex:
|
|
"""
|
|
An N-dimensional iterator object to index arrays.
|
|
|
|
Given the shape of an array, an `ndindex` instance iterates over
|
|
the N-dimensional index of the array. At each iteration a tuple
|
|
of indices is returned, the last dimension is iterated over first.
|
|
|
|
Parameters
|
|
----------
|
|
shape : ints, or a single tuple of ints
|
|
The size of each dimension of the array can be passed as
|
|
individual parameters or as the elements of a tuple.
|
|
|
|
See Also
|
|
--------
|
|
ndenumerate, flatiter
|
|
|
|
Examples
|
|
--------
|
|
Dimensions as individual arguments
|
|
|
|
>>> for index in np.ndindex(3, 2, 1):
|
|
... print(index)
|
|
(0, 0, 0)
|
|
(0, 1, 0)
|
|
(1, 0, 0)
|
|
(1, 1, 0)
|
|
(2, 0, 0)
|
|
(2, 1, 0)
|
|
|
|
Same dimensions - but in a tuple ``(3, 2, 1)``
|
|
|
|
>>> for index in np.ndindex((3, 2, 1)):
|
|
... print(index)
|
|
(0, 0, 0)
|
|
(0, 1, 0)
|
|
(1, 0, 0)
|
|
(1, 1, 0)
|
|
(2, 0, 0)
|
|
(2, 1, 0)
|
|
|
|
"""
|
|
|
|
def __init__(self, *shape):
|
|
if len(shape) == 1 and isinstance(shape[0], tuple):
|
|
shape = shape[0]
|
|
x = as_strided(_nx.zeros(1), shape=shape,
|
|
strides=_nx.zeros_like(shape))
|
|
self._it = _nx.nditer(x, flags=['multi_index', 'zerosize_ok'],
|
|
order='C')
|
|
|
|
def __iter__(self):
|
|
return self
|
|
|
|
def ndincr(self):
|
|
"""
|
|
Increment the multi-dimensional index by one.
|
|
|
|
This method is for backward compatibility only: do not use.
|
|
|
|
.. deprecated:: 1.20.0
|
|
This method has been advised against since numpy 1.8.0, but only
|
|
started emitting DeprecationWarning as of this version.
|
|
"""
|
|
# NumPy 1.20.0, 2020-09-08
|
|
warnings.warn(
|
|
"`ndindex.ndincr()` is deprecated, use `next(ndindex)` instead",
|
|
DeprecationWarning, stacklevel=2)
|
|
next(self)
|
|
|
|
def __next__(self):
|
|
"""
|
|
Standard iterator method, updates the index and returns the index
|
|
tuple.
|
|
|
|
Returns
|
|
-------
|
|
val : tuple of ints
|
|
Returns a tuple containing the indices of the current
|
|
iteration.
|
|
|
|
"""
|
|
next(self._it)
|
|
return self._it.multi_index
|
|
|
|
|
|
# You can do all this with slice() plus a few special objects,
|
|
# but there's a lot to remember. This version is simpler because
|
|
# it uses the standard array indexing syntax.
|
|
#
|
|
# Written by Konrad Hinsen <hinsen@cnrs-orleans.fr>
|
|
# last revision: 1999-7-23
|
|
#
|
|
# Cosmetic changes by T. Oliphant 2001
|
|
#
|
|
#
|
|
|
|
class IndexExpression:
|
|
"""
|
|
A nicer way to build up index tuples for arrays.
|
|
|
|
.. note::
|
|
Use one of the two predefined instances `index_exp` or `s_`
|
|
rather than directly using `IndexExpression`.
|
|
|
|
For any index combination, including slicing and axis insertion,
|
|
``a[indices]`` is the same as ``a[np.index_exp[indices]]`` for any
|
|
array `a`. However, ``np.index_exp[indices]`` can be used anywhere
|
|
in Python code and returns a tuple of slice objects that can be
|
|
used in the construction of complex index expressions.
|
|
|
|
Parameters
|
|
----------
|
|
maketuple : bool
|
|
If True, always returns a tuple.
|
|
|
|
See Also
|
|
--------
|
|
index_exp : Predefined instance that always returns a tuple:
|
|
`index_exp = IndexExpression(maketuple=True)`.
|
|
s_ : Predefined instance without tuple conversion:
|
|
`s_ = IndexExpression(maketuple=False)`.
|
|
|
|
Notes
|
|
-----
|
|
You can do all this with `slice()` plus a few special objects,
|
|
but there's a lot to remember and this version is simpler because
|
|
it uses the standard array indexing syntax.
|
|
|
|
Examples
|
|
--------
|
|
>>> np.s_[2::2]
|
|
slice(2, None, 2)
|
|
>>> np.index_exp[2::2]
|
|
(slice(2, None, 2),)
|
|
|
|
>>> np.array([0, 1, 2, 3, 4])[np.s_[2::2]]
|
|
array([2, 4])
|
|
|
|
"""
|
|
|
|
def __init__(self, maketuple):
|
|
self.maketuple = maketuple
|
|
|
|
def __getitem__(self, item):
|
|
if self.maketuple and not isinstance(item, tuple):
|
|
return (item,)
|
|
else:
|
|
return item
|
|
|
|
|
|
index_exp = IndexExpression(maketuple=True)
|
|
s_ = IndexExpression(maketuple=False)
|
|
|
|
# End contribution from Konrad.
|
|
|
|
|
|
# The following functions complement those in twodim_base, but are
|
|
# applicable to N-dimensions.
|
|
|
|
|
|
def _fill_diagonal_dispatcher(a, val, wrap=None):
|
|
return (a,)
|
|
|
|
|
|
@array_function_dispatch(_fill_diagonal_dispatcher)
|
|
def fill_diagonal(a, val, wrap=False):
|
|
"""Fill the main diagonal of the given array of any dimensionality.
|
|
|
|
For an array `a` with ``a.ndim >= 2``, the diagonal is the list of
|
|
locations with indices ``a[i, ..., i]`` all identical. This function
|
|
modifies the input array in-place, it does not return a value.
|
|
|
|
Parameters
|
|
----------
|
|
a : array, at least 2-D.
|
|
Array whose diagonal is to be filled, it gets modified in-place.
|
|
|
|
val : scalar or array_like
|
|
Value(s) to write on the diagonal. If `val` is scalar, the value is
|
|
written along the diagonal. If array-like, the flattened `val` is
|
|
written along the diagonal, repeating if necessary to fill all
|
|
diagonal entries.
|
|
|
|
wrap : bool
|
|
For tall matrices in NumPy version up to 1.6.2, the
|
|
diagonal "wrapped" after N columns. You can have this behavior
|
|
with this option. This affects only tall matrices.
|
|
|
|
See also
|
|
--------
|
|
diag_indices, diag_indices_from
|
|
|
|
Notes
|
|
-----
|
|
.. versionadded:: 1.4.0
|
|
|
|
This functionality can be obtained via `diag_indices`, but internally
|
|
this version uses a much faster implementation that never constructs the
|
|
indices and uses simple slicing.
|
|
|
|
Examples
|
|
--------
|
|
>>> a = np.zeros((3, 3), int)
|
|
>>> np.fill_diagonal(a, 5)
|
|
>>> a
|
|
array([[5, 0, 0],
|
|
[0, 5, 0],
|
|
[0, 0, 5]])
|
|
|
|
The same function can operate on a 4-D array:
|
|
|
|
>>> a = np.zeros((3, 3, 3, 3), int)
|
|
>>> np.fill_diagonal(a, 4)
|
|
|
|
We only show a few blocks for clarity:
|
|
|
|
>>> a[0, 0]
|
|
array([[4, 0, 0],
|
|
[0, 0, 0],
|
|
[0, 0, 0]])
|
|
>>> a[1, 1]
|
|
array([[0, 0, 0],
|
|
[0, 4, 0],
|
|
[0, 0, 0]])
|
|
>>> a[2, 2]
|
|
array([[0, 0, 0],
|
|
[0, 0, 0],
|
|
[0, 0, 4]])
|
|
|
|
The wrap option affects only tall matrices:
|
|
|
|
>>> # tall matrices no wrap
|
|
>>> a = np.zeros((5, 3), int)
|
|
>>> np.fill_diagonal(a, 4)
|
|
>>> a
|
|
array([[4, 0, 0],
|
|
[0, 4, 0],
|
|
[0, 0, 4],
|
|
[0, 0, 0],
|
|
[0, 0, 0]])
|
|
|
|
>>> # tall matrices wrap
|
|
>>> a = np.zeros((5, 3), int)
|
|
>>> np.fill_diagonal(a, 4, wrap=True)
|
|
>>> a
|
|
array([[4, 0, 0],
|
|
[0, 4, 0],
|
|
[0, 0, 4],
|
|
[0, 0, 0],
|
|
[4, 0, 0]])
|
|
|
|
>>> # wide matrices
|
|
>>> a = np.zeros((3, 5), int)
|
|
>>> np.fill_diagonal(a, 4, wrap=True)
|
|
>>> a
|
|
array([[4, 0, 0, 0, 0],
|
|
[0, 4, 0, 0, 0],
|
|
[0, 0, 4, 0, 0]])
|
|
|
|
The anti-diagonal can be filled by reversing the order of elements
|
|
using either `numpy.flipud` or `numpy.fliplr`.
|
|
|
|
>>> a = np.zeros((3, 3), int);
|
|
>>> np.fill_diagonal(np.fliplr(a), [1,2,3]) # Horizontal flip
|
|
>>> a
|
|
array([[0, 0, 1],
|
|
[0, 2, 0],
|
|
[3, 0, 0]])
|
|
>>> np.fill_diagonal(np.flipud(a), [1,2,3]) # Vertical flip
|
|
>>> a
|
|
array([[0, 0, 3],
|
|
[0, 2, 0],
|
|
[1, 0, 0]])
|
|
|
|
Note that the order in which the diagonal is filled varies depending
|
|
on the flip function.
|
|
"""
|
|
if a.ndim < 2:
|
|
raise ValueError("array must be at least 2-d")
|
|
end = None
|
|
if a.ndim == 2:
|
|
# Explicit, fast formula for the common case. For 2-d arrays, we
|
|
# accept rectangular ones.
|
|
step = a.shape[1] + 1
|
|
# This is needed to don't have tall matrix have the diagonal wrap.
|
|
if not wrap:
|
|
end = a.shape[1] * a.shape[1]
|
|
else:
|
|
# For more than d=2, the strided formula is only valid for arrays with
|
|
# all dimensions equal, so we check first.
|
|
if not alltrue(diff(a.shape) == 0):
|
|
raise ValueError("All dimensions of input must be of equal length")
|
|
step = 1 + (cumprod(a.shape[:-1])).sum()
|
|
|
|
# Write the value out into the diagonal.
|
|
a.flat[:end:step] = val
|
|
|
|
|
|
@set_module('numpy')
|
|
def diag_indices(n, ndim=2):
|
|
"""
|
|
Return the indices to access the main diagonal of an array.
|
|
|
|
This returns a tuple of indices that can be used to access the main
|
|
diagonal of an array `a` with ``a.ndim >= 2`` dimensions and shape
|
|
(n, n, ..., n). For ``a.ndim = 2`` this is the usual diagonal, for
|
|
``a.ndim > 2`` this is the set of indices to access ``a[i, i, ..., i]``
|
|
for ``i = [0..n-1]``.
|
|
|
|
Parameters
|
|
----------
|
|
n : int
|
|
The size, along each dimension, of the arrays for which the returned
|
|
indices can be used.
|
|
|
|
ndim : int, optional
|
|
The number of dimensions.
|
|
|
|
See Also
|
|
--------
|
|
diag_indices_from
|
|
|
|
Notes
|
|
-----
|
|
.. versionadded:: 1.4.0
|
|
|
|
Examples
|
|
--------
|
|
Create a set of indices to access the diagonal of a (4, 4) array:
|
|
|
|
>>> di = np.diag_indices(4)
|
|
>>> di
|
|
(array([0, 1, 2, 3]), array([0, 1, 2, 3]))
|
|
>>> a = np.arange(16).reshape(4, 4)
|
|
>>> a
|
|
array([[ 0, 1, 2, 3],
|
|
[ 4, 5, 6, 7],
|
|
[ 8, 9, 10, 11],
|
|
[12, 13, 14, 15]])
|
|
>>> a[di] = 100
|
|
>>> a
|
|
array([[100, 1, 2, 3],
|
|
[ 4, 100, 6, 7],
|
|
[ 8, 9, 100, 11],
|
|
[ 12, 13, 14, 100]])
|
|
|
|
Now, we create indices to manipulate a 3-D array:
|
|
|
|
>>> d3 = np.diag_indices(2, 3)
|
|
>>> d3
|
|
(array([0, 1]), array([0, 1]), array([0, 1]))
|
|
|
|
And use it to set the diagonal of an array of zeros to 1:
|
|
|
|
>>> a = np.zeros((2, 2, 2), dtype=int)
|
|
>>> a[d3] = 1
|
|
>>> a
|
|
array([[[1, 0],
|
|
[0, 0]],
|
|
[[0, 0],
|
|
[0, 1]]])
|
|
|
|
"""
|
|
idx = arange(n)
|
|
return (idx,) * ndim
|
|
|
|
|
|
def _diag_indices_from(arr):
|
|
return (arr,)
|
|
|
|
|
|
@array_function_dispatch(_diag_indices_from)
|
|
def diag_indices_from(arr):
|
|
"""
|
|
Return the indices to access the main diagonal of an n-dimensional array.
|
|
|
|
See `diag_indices` for full details.
|
|
|
|
Parameters
|
|
----------
|
|
arr : array, at least 2-D
|
|
|
|
See Also
|
|
--------
|
|
diag_indices
|
|
|
|
Notes
|
|
-----
|
|
.. versionadded:: 1.4.0
|
|
|
|
"""
|
|
|
|
if not arr.ndim >= 2:
|
|
raise ValueError("input array must be at least 2-d")
|
|
# For more than d=2, the strided formula is only valid for arrays with
|
|
# all dimensions equal, so we check first.
|
|
if not alltrue(diff(arr.shape) == 0):
|
|
raise ValueError("All dimensions of input must be of equal length")
|
|
|
|
return diag_indices(arr.shape[0], arr.ndim)
|